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M.J. Schuemie, E. Sen, G.W. 't Jong, E.M. van Soest, M.C. Sturkenboom, J.A. Kors
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"Automating classification of free-text electronic health records for epidemiological studies." Pharmacoepidemiology and Drug Safety. 2012 Jan 24
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J.P. Dieleman, S. Romio, C.S. de Vries, C. Sammon, N. Andrews, A. Hviid, H. Svanström, D. Mølgaard-Nielsen, M. Lapeyre-Mestre, A. Sommet, C. Saussier, A. Castot, H. Heijbel, L. Arnheim Dahlström, J. Hallgren, P. Sparen, M. Mosseveld, M. Schuemie, N. van der Maas, B.C. Jacobs, K. Johansen, P. Kramarz, D. Weibel, J. Bonhoeffer, M.C. Sturkenboom
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"Guillain-Barre syndrome and adjuvanted pandemic influenza A (H1N1) 2009 vaccine: multinational case-control study in Europe.", British Medical Journal 2011 Jul 12; 343:d3908
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G. Trifirò, V. Patadia, M.J. Schuemie, P.M. Coloma, R. Gini, R. Herings, J. Hippisley-Cox, G. Mazzaglia, C. Giaquinto, L. Scotti, L. Pedersen, P. Avillach, M.C. Sturkenboom, J. van der Lei, Eu-Adr Group
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"EU-ADR healthcare database network vs. spontaneous reporting system database: preliminary comparison of signal detection.", Studies in Health Technology and Informatics 2011;166:25-30.
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H.H. van Haagen, P.A. 't Hoen, A. de Morrée, W.M. van Roon-Mom, D.J. Peters, M. Roos, B. Mons, G.J. van Ommen, M.J. Schuemie
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"In silico discovery and experimental validation of new protein-protein interactions.", Proteomics. 2011 Mar,11(5):843-53
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R. Jelier, J.J. Goeman, K.M. Hettne, M.J. Schuemie, J.T. den Dunnen, P.A. 't Hoen
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"Literature-aided interpretation of gene expression data with the weighted global test.", Briefings in Bioinformatics 2011, Feb 9
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P.M. Coloma, M.J Schuemie, G. Trifirò, R. Gini, R.Herings, J. Hippisley-Cox, G. Mazzaglia, C. Giaquinto, G. Corrao, L. Pedersen, J. van der Lei, M.C. Sturkenboom; EU-ADR Consortium
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"Combining electronic healthcare databases in Europe to allow for large-scale drug safety monitoring: the EU-ADR Project.", Pharmacoepidemiology and Drug Safety 2011 Jan;20(1):1-11
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C. Ferrajolo, A. Capuano, K.M. Verhamme, M. Schuemie, F. Rossi, B.H. Stricker, M.C. Sturkenboom
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"Drug-induced hepatic injury in children: a case/non-case study of suspected adverse drug reactions in VigiBase.", British journal of clinical pharmacology 2010, Nov, 70(5):721-8
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M. J. Schuemie
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"Methods for drug safety signal detection in longitudinal observational databases: LGPS and LEOPARD.", Pharmacoepidemiology and Drug Safety 2010, Oct 13
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K.M. Hettne, E.M. van Mulligen. M.J. Schuemie, B.J. Schijvenaars, J.A. Kors
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"Rewriting and suppressing UMLS terms for improved biomedical term identification.", Journal of Biomedical Semantics 2010, 1:1
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H.H.H. van Haagen, PA 't Hoen, A. Botelho Bovo, A. de Morree, E.M. van Mulligen, C. Chichester, J.A. Kors, J.T. den Dunnen, G.J. van Ommen, S.M van der Maarel, V.M. Kern, B.A. Mons, M.J. Schuemie
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"Novel Protein-Protein Interactions Inferred from Literature Context.", PLos ONE, November 18, 2009
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M.J. Schuemie, N. Kang, M.L. Hekkelman, J.A. Kors
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"GeneE: Gene and protein query expansion with disambiguation.", Bioinformatics, October 16, 2009
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M. Roos, M.S. Marshall, A.P. Gibson, M.J. Schuemie, E. Meij, S. Katrenko, W.R. van Hage, K. Krommydas, P.W. Adriaans
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"Structuring and extracting knowledge for the support of hypothesis generation in molecular biology", BMC Bioinformatics, 10(Suppl 10):S9, 2009
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K.M. Hettne, R.H. Stierum, M.J. Schuemie, P.J. Hendriksen, B.J. Schijvenaars, E.M. van Mulligen, J. Kleinjans, J.A. Kors
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"A Dictionary to Identify Small Molecules and Drugs in Free Text", Bioinformatics, Sept 16, 2009
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P.W. Moorman, M.J. Schuemie, J. van der Lei
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"An Inventory of Publicationson Electronic Medical Records Revisited", Methods of Information in Medicine, 48(4), 2009
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E. Steele, A. Tucker, P.A. 't Hoen, M.J. Schuemie
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"Literature-based priors for gene regulatory networks", Bioinformatics, 25(14):1768-1774, 2009
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M.J. Schuemie, J.L. Talmon, P.W. Moorman, J.A. Kors
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"Mapping the domain of medical informatics", Methods of Information in Medicine, 48(1):76-83, 2009
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A.A Morgan, Z. Lu, X. Wang, A.M. Cohen, J. Fluck, P. Ruch, A. Divoli, K. Funde, R. Leaman, J. Hakenberg, C. Sun, H. Liu, R. Torres, M. Krauthammer, W.W. Lau, H. Liu, C. Hsu, M.J. Schuemie, K.B. Cohen, L. Hirschman
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"Overview of BioCreative II gene normalization", Genome Biology, Vol. 9, Suppl. 2, Sep 1, 2008
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R. Jelier, M.J. Schuemie, A.Veldhoven, J.C. Dorssers, G. Jenster, J.A. Kors |
"Anni 2.0: a multipurpose text-mining tool for the life sciences", Genome Biology, Vol. 9, No. 6, Jun 12, 2008
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M.J. Schuemie, J.A. Kors |
"Jane: Suggesting Journals, Finding Experts", Bioinformatics, Vol.25, No.5, pp.727-728, Mar, 2008
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M.J. Schuemie, D. Trieschnigg, W. Kraaij |
"Cross Language Information Retrieval for Biomedical Literature.", The Sixteenth Text REtrieval Conference (TREC 2007), Gaithersburg, November 6-9, 2007
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M.J. Schuemie, R. Jelier, J.A. Kors |
"Peregrine: Lightweight gene name normalization by dictionary lookup", Proceedings of the Biocreative 2 workshop, Madrid, April 23-25, 2007.
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M.J. Schuemie, C. Chichester, F. Lisacek, Y. Coute, P. Roes, J.C. Sanchez, J.A. Kors, B. Mons |
"Assignment of protein function and discovery of novel nucleolar proteins based on automatic analysis of MEDLINE", Proteomics, Vol.7, No.6, pp.921-931, Mar 16, 2007.
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M.J. Schuemie, B. Mons, M. Weeber, J.A. Kors |
"Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification", Journal of Biomedical Informatics, Vol.40, No.3, pp.316-324, June, 2007.
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M. Krijn, P.M.G. Emmelkamp, R.P. Olafsson, M.J. Schuemie, C.A.P.G. van der Mast |
"Do self-statements enhance the effectiveness of virtual reality exposure therapy? A comparative evaluation in acrophobia", Cyber Psychology & Behavior, Vol.10, No.3, pp.362-370, 2007..
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M. Krijn, P.M.G. Emmelkamp, R.P. Olafsson, M. Bouwman, L. van Gerwen, P. Spinhoven, M.J. Schuemie, C.A.P.G. van der Mast |
"Fear of flying treatment methods: Virtual reality exposure vs. cognitive behavioral therapy", Aviation, Space and Environmental Medicine, Vol.78, No.2, pp.121-128, February, 2007.
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D. Trieschnigg, W. Kraaij, M.J. Schuemie |
"Concept Based Document Retrieval for Genomics Literature", The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings, Gaithersburg, 2006.
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B.J.A. Schijvenaars, B. Mons, M. Weeber, M.J. Schuemie, E.M. van Mulligen, H.M. Wain, J.A. Kors
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"Thesaurus-based disambiguation of gene symbols", BMC Bioinformatics, Vol.6, No.149, June 16, 2005.
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B.J.A. Schijvenaars, M.J. Schuemie, E.M. van Mulligen, M. Weeber, R. Jelier, B. Mons, J.A. Kors |
"A Concept-Based Approach to Text Categorization", The Fourteenth Text REtrieval Conference (TREC 2005) Proceedings, Gaithersburg, 2005.
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M.J. Schuemie, J.A. Kors, B. Mons |
"Word sense disambiguation in the biomedical domain: an overview.", Journal of Computational Biology, 12:554-65, June, 2005
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M.J. Schuemie, B. Abel, C.A.P.G. van der Mast, M. Krijn, P.M.G. Emmelkamp |
"The Effect of Locomotion Technique on Presence, Fear, and Usability In a Virtual Environment", in: M. Al-Akaidi & L. Rothkrantz (Eds.), Proceedings of the Euromedia 2005 conference, Toulouse, April, 2005.
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E. Van Mulligen, M. Diwersy,B. Schijvenaars, M. Weeber, C. Van Der Eijk, R. Jelier, M. Schuemie, J. Kors, B. Mons
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"Contextual annotation of web pages for interactive browsing", Medinfo 2004, pp.94-98, 2004.
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M.J. Schuemie, M. Weeber, B.J. Schijvenaars, E.M. van Mulligen, C.C. van der Eijk, R. Jelier, B. Mons, J.A. Kors
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"Distribution of information in biomedical abstracts and full-text publications", Bioinformatics, Vol.20, No.16, pp.2597-2604, November 2004
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M. Krijn, P.M.G. Emmelkamp, R. Biemond, C. de Wilde de Ligny, M.J. Schuemie, C.A.P.G. van der Mast
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"Treatment of acrophobia in Virtual Reality; the role of immersion and presence", Behaviour Research and Therapy, Vol.42, No.2, pp.229-239, February, 2004
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M.J. Schuemie
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"Human-Computer Interaction and Presence in Virtual Reality Exposure Therapy", Ph.D. dissertation, Delft University of Technology, 2003
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M.J. Schuemie, J. van den Berg & R.P.G.H. Tan
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"Self-Organizing Maps, a Visual Exploration Tool", in: J. Meij (Ed.), Dealing with the data flood, STT / Beweton, pp.763-770, 2002.
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M.J. Schuemie
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"Effect of an external viewpoint on therapist performance in virtual reality exposure therapy", CHI2002 Extended Abstracts, AMC press, Minneapolis, Minnesota, pp.834-835, 2002
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P.M.G. Emmelkamp, M. Krijn, A.M. Hulsbosch, S. de Vries, M.J. Schuemie & C.A.P.G. van der Mast
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"Virtual Reality Treatment versus Exposure In Vivo: A Comparative Evaluation in Acrophobia", Behaviour Research & Therapy, Vol.40, No.5, pp.509-516, May, 2002.
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M.J. Schuemie, C.A.P.G. van der Mast, M. Krijn, P.M.G. Emmelkamp
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"Exploratory Design and Evaluation of a User Interface for Virtual Reality Exposure Therapy", in: J.D. Westwood, H.M. Hoffman, R.A. Robb, D. Stredney (Eds.), Medicine Meets Virtual Reality 02/10, IOS Press, pp.468-474, 2002
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M.J. Schuemie, C.A.P.G. van der Mast
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"VR Testbed Configuration", in: M.E. Domingo, J.C.G. Cebollada & C.P. Salvador (Eds.), Proceedings of the Euromedia�2001 Conference, Valencia, Spain, pp.200-204, April 18-20, 2001.
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M.J. Schuemie, P. van der Straaten, M. Krijn, C.A.P.G. van der Mast
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"Research on Presence in Virtual Reality: A Survey", Cyberpsychology and Behavior, Liebert Pub., Vol.4, No.2, pp.183-202, April 2001.
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M.J. Schuemie, C.A.P.G. van der Mast
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"Virtual Reality in de Therapie", in: Proceedings of the Revalidatie Anno 2000 Conference, Nederlands Instituut voor Psychologen, November 17-18, 2000.
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M.J. Schuemie
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"Design of Virtual Reality Exposure Therapy Systems - Task Analysis", CHI 2000 Extended Abstracts, ACM press, The Hague, the Netherlands, pp.345-346, 2000.
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M.J. Schuemie, M. Bruynzeel, L.
Drost, M. Brinckman, G. de Haan, P.M.G. Emmelkamp, C.A.P.G. van der Mast
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"Treatment of Acrophobia in Virtual Reality: a Pilot Study", in F. Broeckx and L. Pauwels (Eds.) Conference Proceedings Euromedia 2000, Antwerp Belgium, pp.271-275, May 8-10, 2000.
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M.J.Schuemie, J. van den Berg
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"Information Retrieval Systems using an Associative Conceptual Space and Self-Organising Maps", Proceedings of the BNAIC'99, University of Maastricht, pp.91-98, 1999.
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M.J. Schuemie, C.A.P.G. van der
Mast
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"Presence: Interacting in VR?", Proceedings of the TWLT 15, University of Twente, pp.213-217, 1999.
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J. van den Berg, M.J.Schuemie
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"Information Retrieval Systems using an Associative Conceptual Space", Proceedings of the ESANN'99, D-Facto Publishing, pp.351-356, 1999.
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M.J. Schuemie, J. van den Berg
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"Associative conceptual space-based information retrieval systems", Technical report 9849, Erasmus University of Rotterdam, 1998.
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M.J. Schuemie
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"Associatieve Conceptuele Ruimte: een vorm van kennisrepresentie voor informatie-zoeksystemen", Master thesis, Erasmus University of Rotterdam, 1998
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